PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g047160.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 299aa    MW: 32194.2 Da    PI: 8.2417
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g047160.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.38e-14218272458
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                        +++rr++kNRe+A rsR+RK+a++ eLe  v +Le+eN +L  e ee +ke  k
  Sopen01g047160.2 218 QQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEENARLLREEEEKNKERLK 272
                       589**************************************99888777776554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.2E-13213277No hitNo description
SMARTSM003389.4E-10215279IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.116217269IPR004827Basic-leucine zipper domain
PfamPF001702.5E-12218270IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.88E-10219270No hitNo description
CDDcd147074.03E-22219259No hitNo description
PROSITE patternPS000360222237IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MASKVMPSAS TTPNSDRSLH PQNPSSSLNH SHPSRNFDSM NMDEILKNIY SDSDPFACSV  60
SATAAVHTPS ATAAGGGGGV GDVGPTKTVD EVWREIVAGG GGGSREPEMT LEDFLTKAGA  120
VTEEDVRVPV IAPPPPPPPP PATGAPSARG FVVDNMMGTG NCQFPVAMQN GPGGYGMEPQ  180
PHMGFGNGVV AITGSGSGSG RGKRRSTVEE LPADRATQQK QRRMIKNRES AARSRERKQA  240
YTVELESLVT QLEEENARLL REEEEKNKER LKQIMENLIP VVEKRRPPRV LRRVRSMSW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064397.10.0PREDICTED: G-box-binding factor 4-like
TrEMBLK4B2391e-167K4B239_SOLLC; Uncharacterized protein
STRINGSolyc01g104650.2.11e-167(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27712452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.13e-20bZIP family protein