PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g046180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 524aa    MW: 56391.1 Da    PI: 7.3998
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g046180.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.51.7e-401362392111
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                       ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+ s++     
  Sopen01g046180.1 136 PPPKRQTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAPpsksa 228
                       56799****************************************************************999877778887775555533333 PP

               TCP  89 ........kaaksaakskksqksaasalnla 111
                               +                    la
  Sopen01g046180.1 229 phsfhsalA--------------------LA 239
                       333333321....................22 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-38141242IPR005333Transcription factor, TCP
PROSITE profilePS5136928.542142196IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MELTDLQNNN TNSNSKQQTT TNNTTPSPPL HHQNQHQHQY QLLSQHHHHQ QQLQQQHGRS  60
SVPFMTSISI QPTAQAPITN SATNASPSTS SPTPPQPPHL VDASLAIATR SDTLVDPNKK  120
SQLAIQQTQH VQPQQPPPKR QTKDRHTKVD GRGRRIRMPA ACAARVFQLT RELGHKSDGE  180
TIEWLLQQAE PAIIAATGTG TIPANFSTLN ISLRSSGSTL SAPPSKSAPH SFHSALALAA  240
AHQTPHPFEE GFSQMLGFHH NTHLLTQNPI AESIPGGGGS SGDGGGVGGQ EGADNYLRKR  300
YREDLFKEEG SSNQPGEASG GSTSPSNKQF KGNSPQLPNK PNSQEGVAGP SSNMLRHTNM  360
IPATGLWAVA PPPTSGTTGG SPFWMLPVTS GQTLSAPMAS TSGTTTLESQ MWPFPMGSSN  420
TIQAPLHFMP RFNIPPNLEF QSGRGNPLQL GSMLMQQQQP SQHLGLGMAE TNLGMLAALN  480
AYSRGGLNMN SDHQQTHSLD HHQQQQQHQP QPTDSDEDDP NNSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062151.10.0transcription factor TCP8
TrEMBLG3BGV10.0G3BGV1_SOLLC; TCP transcription factor 11
STRINGPGSC0003DMT4000641640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114842125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.17e-55TCP family protein