PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g037680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 280aa    MW: 30199.9 Da    PI: 10.7645
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g037680.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.91.6e-2969140966
               TCP   9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............s 66 
                        ++ Tkv+g +RR+R++a+caar+F+L++eLG+++d++ti+WLl+ a+p+i+ +tgt              +
  Sopen01g037680.1  69 ADRLTKVDGGGRRIRIPATCAARVFQLTRELGHKTDGETIQWLLERAEPSIISATGTgvtavsingttkipT 140
                       69*******************************************************766666555544421 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136920.17268122IPR017887Transcription factor TCP subgroup
PfamPF036346.6E-2469148IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MESKNIKFFT AAPPSAWRRQ VAPPLISPKQ EPHDLAEKVP TPSIIKVTLP TPKPRPSVPP  60
QLPLRGNDAD RLTKVDGGGR RIRIPATCAA RVFQLTRELG HKTDGETIQW LLERAEPSII  120
SATGTGVTAV SINGTTKIPT TDNNDTLTGK RKRCDCVHVK LNDFKQRNNH PITTIRENDA  180
KLPNNMATIL APVMSIIPPQ AIMPVGSMFP VPARMNSSMA APSTVWLIQQ TPLIPSTRQS  240
AAQVNCVSVR PAATFFGVPN ASLIPASATN VCSSHSPGHC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062294.10.0transcription factor TCP9
SwissprotO646473e-36TCP9_ARATH; Transcription factor TCP9
TrEMBLM1DWQ31e-165M1DWQ3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000956261e-166(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-38TCP family protein