PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g027380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 251aa    MW: 27972.1 Da    PI: 5.4263
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g027380.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.5e-2188137255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G+r+++ +g+W+AeIrdp     +  r++lg+f tae+Aa+a+++a+k+++g
  Sopen01g027380.1  88 KYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEDAARAYDEAAKRIRG 137
                       8********.**********94....35************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.2588145IPR001471AP2/ERF domain
PfamPF008473.5E-1488137IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2288146IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-3388145IPR001471AP2/ERF domain
CDDcd000188.85E-3588146No hitNo description
SMARTSM003804.2E-4088151IPR001471AP2/ERF domain
PRINTSPR003671.1E-1189100IPR001471AP2/ERF domain
PRINTSPR003671.1E-11111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MCGGAIISDY DPAGSFYRKL SSRDLWDELD PISDYWSSSS SSSTVGKPDS ALSPVTHSVD  60
KPNKSDSGKK GNKTVKEKSS GPRPRKNKYR GIRQRPWGKW AAEIRDPQKG VRVWLGTFNT  120
AEDAARAYDE AAKRIRGDKA KLNFPAPSPP AKRQCTSTVA AADPPPALLL ESSDNSPLMN  180
FGYDVQYQSQ TPYYPMEMPI VSDDYELKEQ ISNLESFLEL EPSDQFSGIV DSDPLNVFLM  240
EDFASTHHQF Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2489145360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6162650.0JN616265.1 Solanum lycopersicum ERF6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067275.10.0ethylene-responsive transcription factor RAP2-3
TrEMBLH6U7081e-176H6U708_SOLLC; ERF6
STRINGSolyc01g065980.2.11e-177(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.19e-45ethylene-responsive element binding protein