PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g026110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 286aa    MW: 32116 Da    PI: 8.3896
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g026110.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS105.76.3e-331102804169
              GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl....fsevsPil 91 
                       lL + Ae++s+++  +a +lL   +  asp+g+p+qR++ yf+e L++r+++ ++++  +  +  + +++ ++++l+  ++      ++ P+ 
  Sopen01g026110.1 110 LLQDSAEMFSKRHYDRAMELLRLCNLSASPSGNPVQRVVYYFAESLQNRINK-GTGIQPIAaKIDAVNPNIMEDVLMDPRTdvieTEQMLPFR 201
                       67789**********************************************9.6666655534455555557777777766777899****** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfA 169
                       k++++t  qaIl++v++ +r+H iDf+i+ G QW  L+qaL    e pp +l+iT+vg +    +e    t + L kfA
  Sopen01g026110.1 202 KVTQFTGIQAILDSVKSFKRIHLIDFGIKTGSQWTILMQALVGNGECPPeHLKITAVGTSLIRMQEHGLITCNLLYKFA 280
                       ******************************************87765555********954444444445555666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.83781286IPR005202Transcription factor GRAS
PfamPF035142.2E-30110280IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDSSLANKGK NQMQRPRCAE EKKESSCLPS ASCTILQKHY CGGKMREKSH DIPSSNTSGS  60
HAPSTVSIFE MGRAQLLQRT SKKEDSCSFT SNMYYGMYPQ ALEDFELALL LQDSAEMFSK  120
RHYDRAMELL RLCNLSASPS GNPVQRVVYY FAESLQNRIN KGTGIQPIAA KIDAVNPNIM  180
EDVLMDPRTD VIETEQMLPF RKVTQFTGIQ AILDSVKSFK RIHLIDFGIK TGSQWTILMQ  240
ALVGNGECPP EHLKITAVGT SLIRMQEHGL ITCNLLYKFA KVWIHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-1613628232173GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169309.11e-127PREDICTED: DELLA protein RGL3-like
TrEMBLM1BZ591e-126M1BZ59_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000562291e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85001728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.18e-16GRAS family protein