PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g026100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 330aa    MW: 37589.3 Da    PI: 5.2494
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g026100.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS189.52.2e-58343274296
              GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalkl......fse 86 
                       lL + Ae++s+++ e+a++lL+  +  asp+g+p+qR++ ++ eA ++r++++ +++   l+  +  + +     +eel+           ++
  Sopen01g026100.1  34 LLQASAEMFSKRHYERATELLSLCNLSASPTGTPVQRVVYCYSEAQRERINKEKKSITG-LQLDRLVDFEvkpiGVEELSLC-PkphviaCYH 124
                       67788***********************************************7666664.3333322211223433333333.134556799* PP

              GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfA.eelgvpfe 177
                       + P+++++++++ +aIl+  ++e+r+H iDf+i  G++W  L+qaLa+R + p   l+iT++g      k+ + +tg+rL++fA e+++ pf 
  Sopen01g026100.1 125 ALPFYQVAQFACIEAILDNGKSERRLHLIDFGIRSGAHWTILMQALANRGDCPLdLLKITAIGT----YKQVVDQTGKRLSSFAaENMNCPFF 213
                       *************************************************9554449********....9**************73679***** PP

              GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                       fn+ v+++++dl+ + ++++++E++ V + + l  +l+ + +le     vL+++ sl+P v+ v+e ea+ n++ F++rf e++  y++lfd+
  Sopen01g026100.1 214 FNA-VVSEMKDLSKDLFELDTNEVVEVYSEYVLGGMLAWPNHLEV----VLRFIESLNPCVIMVIETEANINKPIFMDRFNESVFLYATLFDC 301
                       ***.7999****************************966666655....******************************************** PP

              GRAS 271 leaklpreseerikvErellgreivn 296
                       le+ +++++++r+  Er +l++ + n
  Sopen01g026100.1 302 LETFMGPDNQHRMEFERLVLRKILHN 327
                       *****************988765555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.0015330IPR005202Transcription factor GRAS
PfamPF035147.5E-5634327IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSKKEDDPSI ASQPLNSHSD MSLEVSYDLQ LALLLQASAE MFSKRHYERA TELLSLCNLS  60
ASPTGTPVQR VVYCYSEAQR ERINKEKKSI TGLQLDRLVD FEVKPIGVEE LSLCPKPHVI  120
ACYHALPFYQ VAQFACIEAI LDNGKSERRL HLIDFGIRSG AHWTILMQAL ANRGDCPLDL  180
LKITAIGTYK QVVDQTGKRL SSFAAENMNC PFFFNAVVSE MKDLSKDLFE LDTNEVVEVY  240
SEYVLGGMLA WPNHLEVVLR FIESLNPCVI MVIETEANIN KPIFMDRFNE SVFLYATLFD  300
CLETFMGPDN QHRMEFERLV LRKILHNVHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-235032123288GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079853.10.0PREDICTED: DELLA protein RGL2-like
TrEMBLM1BZ591e-142M1BZ59_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000562291e-142(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85001728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-32RGA-like 2