PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g009430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 174aa    MW: 19873.6 Da    PI: 10.2998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g009430.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-18104154155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+GVr++k +g+WvAeI+d      ++kr +lg+f ta+eAa a+++a+ +++g
  Sopen01g009430.1 104 KKYRGVRQRK-WGSWVAEIQD----RrMNKRRWLGSFATAYEAALAYDKAAIEIKG 154
                       59*******9.**********....3356***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.04E-27104160No hitNo description
PROSITE profilePS5103219.44105162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-25105160IPR001471AP2/ERF domain
SMARTSM003801.9E-29105168IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-17105161IPR016177DNA-binding domain
PfamPF008471.2E-12105154IPR001471AP2/ERF domain
PRINTSPR003673.3E-8106117IPR001471AP2/ERF domain
PRINTSPR003673.3E-8128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MASKDELHEN EVVKNHSKVA RGKKTNLMGD CSIVLPRVVR IYITDNDATD SSSDEEENHQ  60
GEKSKRQKRI CKEIIIKNGK TNVTSKILSS KEKNDTKPHH ENVKKYRGVR QRKWGSWVAE  120
IQDRRMNKRR WLGSFATAYE AALAYDKAAI EIKGPNALTN ILKPPPKESD PINH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-14104161462ATERF1
3gcc_A1e-14104161462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025885736.11e-113ethylene-responsive transcription factor ERF069-like
TrEMBLA0A097F7I61e-107A0A097F7I6_9SOLA; CRF7
STRINGSolyc01g014720.1.11e-113(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-23cytokinin response factor 4