PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g009300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 174aa    MW: 20017.9 Da    PI: 10.3304
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g009300.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643e-20104154155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+GVr++k +g+WvAeIrd      ++kr++lg+f ta+eAa a+++a+ +++g
  Sopen01g009300.1 104 KKYRGVRQRK-WGSWVAEIRDiR----MNKRHWLGSFPTADEAALAYDKAAIEIKG 154
                       59*******9.**********44....34***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.08E-28104160No hitNo description
Gene3DG3DSA:3.30.730.107.5E-27105160IPR001471AP2/ERF domain
SMARTSM003802.5E-31105168IPR001471AP2/ERF domain
PROSITE profilePS5103220.732105165IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-18105161IPR016177DNA-binding domain
PfamPF008473.3E-14105154IPR001471AP2/ERF domain
PRINTSPR003678.5E-9106117IPR001471AP2/ERF domain
PRINTSPR003678.5E-9128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MASKDELHEN EVVKKPSKVV RGKKTNLMGD CSMVWPRVVR IYITDNDATD SSSDEEENHQ  60
GEKFKRQKRI CKEIIIKNGK TKVTSKMVSS KDKIDTKPHQ DNVKKYRGVR QRKWGSWVAE  120
IRDIRMNKRH WLGSFPTADE AALAYDKAAI EIKGPNALTN ILKLPPRESD PIHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-16104161159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-16104161462ATERF1
3gcc_A7e-16104161462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769795.11e-127LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF069-like
SwissprotQ9SUE33e-30CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A097F7I67e-98A0A097F7I6_9SOLA; CRF7
STRINGSolyc01g014720.1.11e-103(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-22cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]