PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g004380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 344aa    MW: 39212.6 Da    PI: 9.891
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g004380.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19105154154
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                       ++ykGVr+++ +g+W+AeIrd    n  ++r +lg+f+taeeAa a+++a+ +++
  Sopen01g004380.1 105 KKYKGVRQRR-WGKWAAEIRDtK--N--KTRLWLGSFDTAEEAALAYDKAATEIR 154
                       59*****998.**********33..3..4**********************9987 PP

2AP261.61.8e-19261311256
               AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr++k +g+W+AeIrd      k++r +lg+f+ta eAa a+++a+ +++g+
  Sopen01g004380.1 261 KYRGVRRRK-WGKWAAEIRDtR----KKTRLWLGTFDTALEAALAYDKAAIEIRGA 311
                       8*****998.**********33....36*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.34E-26105154No hitNo description
PROSITE profilePS5103220.139106165IPR001471AP2/ERF domain
SMARTSM003804.5E-28106171IPR001471AP2/ERF domain
PfamPF008471.8E-13106155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-25106155IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-18106156IPR016177DNA-binding domain
PRINTSPR003673.3E-10107118IPR001471AP2/ERF domain
PRINTSPR003673.3E-10129145IPR001471AP2/ERF domain
CDDcd000182.95E-29261316No hitNo description
SuperFamilySSF541712.62E-20261317IPR016177DNA-binding domain
SMARTSM003802.1E-33261324IPR001471AP2/ERF domain
PfamPF008471.8E-14261310IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-28261316IPR001471AP2/ERF domain
PROSITE profilePS5103222.036261318IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MASKDEHKEN EAVEEPSDIP RVEKSINPVG ESSVVLPRVV RIYMPDSDAT DSSSDEEEKL  60
QGEKSKRHER TCIKEIIIEN GKTRVISKKT SKEKKDIKMF QENAKKYKGV RQRRWGKWAA  120
EIRDTKNKTR LWLGSFDTAE EAALAYDKAA TEIRAMTPKE ELQVKEGVKE PSVIAVVEKS  180
SNQVGEISQV FPRLVRIHAP DHDTTDSSSD EEEKDEEEKS EGHERTCVKE IIIENGNTKG  240
ISKKKSKEKK ALNLMQEDVN KYRGVRRRKW GKWAAEIRDT RKKTRLWLGT FDTALEAALA  300
YDKAAIEIRG ANALTNILKP PPKKNNPIKI NFIVPPLKRQ KADP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-181063171371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064295.10.0ethylene-responsive transcription factor CRF2-like isoform X2
RefseqXP_015064302.10.0ethylene-responsive transcription factor CRF2-like isoform X2
SwissprotQ9SUE34e-27CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLM1C2N10.0M1C2N1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000584420.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.13e-13ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]