PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g004250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 327aa    MW: 36370.1 Da    PI: 8.9236
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g004250.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.11.1e-094183345
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                      + k  rr+ +NReAAr+sR+RKka++++Le    +L++  ++L
  Sopen01g004250.1 41 DQKTLRRLSQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 83
                      67899*************************9888888777655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-83686No hitNo description
SMARTSM003381.7E-739102IPR004827Basic-leucine zipper domain
PfamPF077164.4E-74185IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154185IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.98E-74386No hitNo description
PROSITE patternPS0003604661IPR004827Basic-leucine zipper domain
PfamPF141447.7E-31126200IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MADVSAMTDT STDVDTDDKN LRYLNSLTLG ATSDASDKTR DQKTLRRLSQ NREAARKSRL  60
RKKAYVQQLE SSRMKLTQLE QELQRARQQG IYVSSSGDQS QSMSGNGALA FDVEYARWLE  120
EHNRRTNELR GAVSSHAGDG ELRIIVDGIL AHYDDLFKIK ADAAKADVFH ILSGMWKTPA  180
ERCFLWLGGF RSSELLKLLI NQLEPLTDQQ SLAINNLQQS SQLAEDALSQ GIESLQQSLA  240
ETLAGSLGPS GSSGNVANYM GQMAMAMGKL GTLEGFILQA DNLRQRMLQQ MHRILTTRQS  300
ARALLAIGDY FARLRALSSL WLARPRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062252.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotQ415581e-178HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLK4AT690.0K4AT69_SOLLC; Uncharacterized protein
STRINGSolyc01g008730.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-138bZIP family protein