PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g003750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 249aa    MW: 26090.2 Da    PI: 9.2448
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g003750.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.78.5e-3831116288
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                       ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  ++s ++s s  s +
  Sopen01g003750.1  31 TVKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSLRNSIS--SVT 116
                       689******************************************************************87743333333333..222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-3437126IPR005333Transcription factor, TCP
PROSITE profilePS5136927.6753791IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSTSVEQNGA VLLDSTAGSG GGVANSNGAL TVKKPPAKDR HSKVDGRGRR IRMPIVCAAR  60
VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTIPAS FSTVSVSLRN SISSVTASAP  120
VDHKFPSPSP SLLHPLISPA PFLLGKRLRS EDDDNGSGDK DVVPSAGFWA VPARPDFGQV  180
WSFAAPSPEI SHSAAAAMNT QPSRFLQQQM EEASAGRVGN YFPIAQGHLN LLASLSGSGS  240
GPRRDDDGQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062295.10.0transcription factor TCP7
SwissprotQ9FMX22e-80TCP7_ARATH; Transcription factor TCP7
TrEMBLG3BGV51e-178G3BGV5_SOLLC; TCP transcription factor 15
STRINGSolyc01g008230.2.11e-179(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39512242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-72TCP family protein