PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_215520_cazh.t1
Common NameSOVF_215520
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 331aa    MW: 38298.2 Da    PI: 6.5109
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_215520_cazh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-1258102655
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++Er+RR+++N+++  Lr+l+P+ +      Kl+ a+iL  A++Y+++Lq
  Sp_215520_cazh.t1  58 LMAERKRRKKLNERLYHLRSLVPNiS------KLDRASILGDAIKYVQELQ 102
                        589*********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.13952101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1654114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-1254106No hitNo description
SMARTSM003535.1E-1658107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-1058102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-1559113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
QQQQQQQQQQ QVDDKGPMPP KHEMSRADSI SDSDPLDDDD DPKYHRRKPT KGPQSKNLMA  60
ERKRRKKLNE RLYHLRSLVP NISKLDRASI LGDAIKYVQE LQKEEKDLQY ELARNSDDEE  120
HNNDLNIDYH QHHQMNISPE IQNAQGTRFG PEFDHEKTRN GFQLGGGTPE SLKRSHDIES  180
ANDKAQQMEV QVEVAQLEGN DFFVKVFGEQ KRGGFVRLME ALNCLGLEII NVNMTSCISL  240
VSYVFIVKMR DSENVQAEYL RDSLLEATRN QAGFWSEMAK ASSENGSGVD HRQQNQNQNQ  300
NQNQNHHYGL QQHIHNHHIG PFHNHFHHIS N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14566RRKPTKGPQSKNLMAERKRRKK
26067ERKRRKKL
3169174ESLKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690347.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X1
SwissprotQ9ZVX22e-68AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLA0A0K9Q6S80.0A0A0K9Q6S8_SPIOL; Uncharacterized protein (Fragment)
STRINGSolyc08g062780.1.16e-82(Solanum lycopersicum)
STRINGPGSC0003DMT4000211658e-84(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-51bHLH family protein