PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_213220_watr.t1
Common NameSOVF_213220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 533aa    MW: 59610.5 Da    PI: 7.3091
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_213220_watr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.74.9e-36511941128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee........vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                        lp+G++F+Ptd+el+ e+L++kvegk+ + ++        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++    
  Sp_213220_watr.t1  51 LPAGVKFDPTDQELI-EHLEAKVEGKSSKSSHplidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecd 140
                        799************.99*********44433444454444766646**********.555666799******************7333455 PP

                NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                            + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Sp_213220_watr.t1 141 lqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 194
                        5544778************.999***********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3846213IPR003441NAC domain
PROSITE profilePS5100532.6551213IPR003441NAC domain
PfamPF023652.9E-1652194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MNISNKTQLN SISTASDLID AKLEEHQLCG SKHCPGCGHK LEGSKPDWVG LPAGVKFDPT  60
DQELIEHLEA KVEGKSSKSS HPLIDEFIPT IEGEDGICYT HPEKLPGVTR DGLSRHFFHR  120
PSKAYTTGTR KRRKIQTECD LQGGETRWHK TGKTRPVMVN GKQKGCKKIL VLYTNFGKNR  180
KPEKTNWVMH QYHLGQHEEE KEGELVVSKI FYQTQPRQCN WTSERTATTG DGSEPSGRRE  240
SGSGSGSTSS SKEVITHHNR DDQMSISAGV VGGGAAAAAA VAAAAALSSF TALDMQHLRA  300
TAEQFSFVPF SRKTFDEAGI GDASTTVRES ASMSAVCDNH EQRQQQQQQQ QQQQQQQHHH  360
HLHHNPHAMN APQDHHHHHH THQSITTSAA FHMNRPSNPI SQIISPPPLH HASIILDDDS  420
FHHVSRMLQN QNFHHQQQQQ NQQQQQQQQQ HQQQHQQTTQ QQQQQQHHHK LAARSGAGLE  480
EIIMGCTSSA SPSASGGIKE ESSLTNPPTE ADWMKYSTFW HDPDHSDHHH HHG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850614.10.0myb-like protein Q isoform X5
SwissprotQ9M0F81e-170NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0K9Q9050.0A0A0K9Q905_SPIOL; Uncharacterized protein
STRINGXP_010688374.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-140NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]