PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_212040_dcah.t1
Common NameSOVF_212040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 506aa    MW: 56242.4 Da    PI: 6.3885
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_212040_dcah.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13347393455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h  +Er+RR+++N++f  Lr+l+P+ +      +l+Ka+ L  A+ YI++Lq
  Sp_212040_dcah.t1 347 SHVLAERQRREKLNQRFYALRSLVPNiS------RLDKASLLLDAISYINDLQ 393
                        7999**********************66......9*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-4648230IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.244343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-18346407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.69E-14346396No hitNo description
SuperFamilySSF474591.83E-18346413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-11347393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-15349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00838451504No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MGQNYVLKEE EKALVQAVVR KDAYSFLMST AYDDSLSEFN PPGDILNLQQ GLCQIVDGSS  60
WNYAIFWQIA SSKNGRAVLI WGDGHCRDPK AVLPREGLDC VGNGKLGKNE AKKRVLEKLH  120
ACFGGSEEDN FAATLDKVSD IEMLYLTSMY YWFRLDSSLG PAKSFTSGRP IWVSDVRSCL  180
DHYQSRAHLA KSAMFQTVVF VPVKTGVLEL GSVRTVMEQP SLVQMVKTVF GESHSFQSKV  240
TPKVFGRDLS LGGSRPRSMN ISFAGRMEDD ASFSAESHVA VNGLSLSPSN GKNTENSDKK  300
FCSEINFGGS NPESDEVSEE FLLHAAELRA RKRPVRRPAT GREDASSHVL AERQRREKLN  360
QRFYALRSLV PNISRLDKAS LLLDAISYIN DLQAKINVLE AEKEGANPNP NPNPNPNPNP  420
NSDQEELPIP EIDFQARQDD ALVHISFPLD DHPVSKVVRT LREHQLVALE ANVSTIDDKM  480
VHTFKIRAQS DGAESLKEKL EAALFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-15482309192Transcription factor MYC3
4rqw_B5e-15482309192Transcription factor MYC3
4rs9_A5e-15482309192Transcription factor MYC3
4yz6_A5e-15482309192Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679204.10.0PREDICTED: transcription factor bHLH3-like
TrEMBLA0A0K9Q7E40.0A0A0K9Q7E4_SPIOL; Uncharacterized protein
STRINGPOPTR_0002s04310.11e-164(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-141bHLH family protein