PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_209620_ffcc.t1
Common NameSOVF_209620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 288aa    MW: 33113.2 Da    PI: 6.9694
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_209620_ffcc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM141.83.9e-44111912129
                NAM  12 eelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                        eel+++yLkkkv+ +k++l +vi+++d++k+ePwd+++  k+ +  +++wyfFs++dkky+tg+r+nrat +g+Wkatg+dk+++s +++ +
  Sp_209620_ffcc.t1   1 EELLQYYLKKKVAFEKIDL-DVIRDIDLNKLEPWDIQEkcKIGSgPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKTIHS-NNKRI 90 
                        79*****************.9***************952444443456**************************************.9999* PP

                NAM 101 glkktLvfykgrapkgektdWvmheyrle 129
                        g++ktLvfykgrap+gek+dW+mheyrle
  Sp_209620_ffcc.t1  91 GMRKTLVFYKGRAPHGEKSDWIMHEYRLE 119
                        ***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023655.6E-201118IPR003441NAC domain
SuperFamilySSF1019412.48E-471145IPR003441NAC domain
PROSITE profilePS5100548.711145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
EELLQYYLKK KVAFEKIDLD VIRDIDLNKL EPWDIQEKCK IGSGPQNDWY FFSHKDKKYP  60
TGTRTNRATV AGFWKATGRD KTIHSNNKRI GMRKTLVFYK GRAPHGEKSD WIMHEYRLED  120
CTTTVTIQES CLTEDGWVIC RVFKKKNYQK AIESPRSTDE NQQSQVLNYS SKKVFDHIFS  180
CMGKFDCPTT DETSTATITN IIPSFNISNS QTGVFDDQYN NHLPMLTCSS SSSPPFDDHN  240
NHALFKCSDV SPPRLSDWMS LDRLIASQLN GCQDDQDLIC SNSVMFHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-42114726170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00321DAPTransfer from AT2G46770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855488.10.0NAC domain-containing protein 43-like
SwissprotQ84WP67e-90NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A0K9QA320.0A0A0K9QA32_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010676921.11e-120(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.13e-92NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]