PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_199490_ehdm.t1
Common NameSOVF_199490
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 285aa    MW: 31197.6 Da    PI: 6.6299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_199490_ehdm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.1e-091459554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       +  rE++RR r+N+ f eL   l ++     +K++Ka+iL  +v+ +k+L
  Sp_199490_ehdm.t1 14 KAGREKQRRCRLNEQFIELGNTLDSD----RPKNDKATILSDTVQLLKDL 59
                       5669*********************8....79***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.208959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-51063No hitNo description
Gene3DG3DSA:4.10.280.106.2E-121082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-111077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-61459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-61565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDYEDPTAVR KLQKAGREKQ RRCRLNEQFI ELGNTLDSDR PKNDKATILS DTVQLLKDLT  60
AEVDKLKAEH AALSDESREL TQEKNDLREE KTALKSDIDR LGAQCQQRVG PAAAYPWVAM  120
DSVLQHPPSY PYPMPIPGPI PMHHMSMQPY PFFGSPNPGM YANPCSTFIP YMAPNPPPEH  180
PSTQDVSPPL QPGSRTQVSA RQGIGTSSDK HERQVNRNEN SSDVPTNLEL KTPGSTTDEN  240
TSSRDKSRKR SIAADGSSLS RCSSHSVQDS SSSSIVGGGG GKGND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690444.11e-150PREDICTED: transcription factor bHLH121-like
RefseqXP_010690442.11e-150PREDICTED: transcription factor bHLH121-like
SwissprotQ9LT233e-71BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0K9QB230.0A0A0K9QB23_SPIOL; Uncharacterized protein
STRINGSolyc01g111130.2.18e-93(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-67bHLH family protein