PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_197080_wmsc.t1
Common NameSOVF_197080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 90aa    MW: 10362.7 Da    PI: 9.3615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_197080_wmsc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-0821581855
                       HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                       +  ++L++l+P+ + + +s K+s + +L+++++YI++Lq
  Sp_197080_wmsc.t1 21 QLVSKLQQLVPEvR-QRRSDKVSASKVLQETCNYIRNLQ 58
                       55689*******65.9**********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.499357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-81875IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-81972IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-62158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSSRRSRQSG SSRISDDQII QLVSKLQQLV PEVRQRRSDK VSASKVLQET CNYIRNLQRE  60
MDDLSDRLSQ LLTTVDADSE EARIIRSLLN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693223.14e-46PREDICTED: transcription factor PRE6
SwissprotQ9LJX14e-39PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0K9QDA71e-55A0A0K9QDA7_SPIOL; Uncharacterized protein
STRINGGLYMA18G49320.13e-45(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-34bHLH family protein