PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_172350_xysh.t1
Common NameSOVF_172350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 191aa    MW: 22309.9 Da    PI: 4.7099
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_172350_xysh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.63.5e-3471261128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrF Ptdeelvv++L++k +  + +  ++i+++d+y ++PwdL+ k+ +e ++wy++s++         +nr+ +sgyWk+ g d+++
  Sp_172350_xysh.t1   7 LPPGFRFCPTDEELVVHFLRRKDDLLPYHP-DIIPDLDVYPYNPWDLQGKALSEGNKWYYYSRK--------MQNRVSDSGYWKQMGMDEPI 89 
                        79*************************988.89***************77778899*****997........45899*************** PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s+  ++ vg+kk  vf+ g+ ++ + t+W+mheyrl
  Sp_172350_xysh.t1  90 MSSsCRKIVGIKKYYVFHIGDPSNDVWTSWIMHEYRL 126
                        *9977888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-454157IPR003441NAC domain
PROSITE profilePS5100542.9847158IPR003441NAC domain
PfamPF023651.9E-218126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGDNNNLPPG FRFCPTDEEL VVHFLRRKDD LLPYHPDIIP DLDVYPYNPW DLQGKALSEG  60
NKWYYYSRKM QNRVSDSGYW KQMGMDEPIM SSSCRKIVGI KKYYVFHIGD PSNDVWTSWI  120
MHEYRLPDSG SSSKSTSRKR GNPKLDYSKR VICKVFEQRN DDDDGDNDTE LSCLDEVFLS  180
MDDLDEISLP N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-33616116168NO APICAL MERISTEM PROTEIN
1ut4_B7e-33616116168NO APICAL MERISTEM PROTEIN
1ut7_A7e-33616116168NO APICAL MERISTEM PROTEIN
1ut7_B7e-33616116168NO APICAL MERISTEM PROTEIN
3swm_A7e-33616019170NAC domain-containing protein 19
3swm_B7e-33616019170NAC domain-containing protein 19
3swm_C7e-33616019170NAC domain-containing protein 19
3swm_D7e-33616019170NAC domain-containing protein 19
3swp_A7e-33616019170NAC domain-containing protein 19
3swp_B7e-33616019170NAC domain-containing protein 19
3swp_C7e-33616019170NAC domain-containing protein 19
3swp_D7e-33616019170NAC domain-containing protein 19
4dul_A7e-33616116168NAC domain-containing protein 19
4dul_B7e-33616116168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860940.11e-140NAC domain-containing protein 104
SwissprotQ8GWK68e-76NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0K9QJG51e-138A0A0K9QJG5_SPIOL; Uncharacterized protein
STRINGXP_010687465.11e-100(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-75xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]