PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_170630_gkqf.t1
Common NameSOVF_170630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TCP
Protein Properties Length: 383aa    MW: 42107.7 Da    PI: 6.929
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_170630_gkqf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.21.3e-29252441133
                TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 
                        a+g+kdrhsk+ T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak +i++l ++                           
  Sp_170630_gkqf.t1  25 ATGRKDRHSKVFTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLMKKAKSSIDKLEELppwdpianasngvdvnvgstefpvgdn 116
                        589****************************************************************************************9 PP

                TCP  66 ..............................ssssasec..eaesssssasnsssg..................................... 88 
                                                      +     ++  ++ s          +                                     
  Sp_170630_gkqf.t1 117 tgstsfyvpqcvdsqslsdsmksffptnnnN-----NSnnNNTSV---------Ensisfqnyqqpdfisrggshqnsqdlclslhtlqdpr 194
                        9999999999888777655555555332220.....111122222.........13344444446677777777777777777777777777 PP

                TCP  89 ................................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                                        +                           +++++++++++++++++
  Sp_170630_gkqf.t1 195 gqhqtqhlshdsalfqgsgsslgfdvgwtesqQ---------------------------QQQQQQQQQQQQQQQQQ 244
                        755555555555555555555555554443210...........................11111111111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.5E-2826252IPR005333Transcription factor, TCP
PROSITE profilePS5136931.1362886IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGVKNNTNGG GGEIVQVQGG HIIRATGRKD RHSKVFTAKG PRDRRVRLAA HTAIQFYDVQ  60
DRLGYDRPSK AVDWLMKKAK SSIDKLEELP PWDPIANASN GVDVNVGSTE FPVGDNTGST  120
SFYVPQCVDS QSLSDSMKSF FPTNNNNNSN NNNTSVENSI SFQNYQQPDF ISRGGSHQNS  180
QDLCLSLHTL QDPRGQHQTQ HLSHDSALFQ GSGSSLGFDV GWTESQQQQQ QQQQQQQQQQ  240
QQQQQQQQQQ QQQQQDLGRF ARMFGWPICG SSNGGGEGRG GMLFNPSQLQ QQGLLLGQQG  300
PMTTSAYSQR GTLQSSFSPL ARVLEDQQHH HHPQEISSIG NGSDGFMGFY IPSQLHGELH  360
GGTNSLSNNR ASSSSLSPDS SQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-213386154Putative transcription factor PCF6
5zkt_B4e-213386154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845298.10.0transcription factor TCP4-like
TrEMBLA0A0K9QJY50.0A0A0K9QJY5_SPIOL; Uncharacterized protein
STRINGXP_010689747.11e-150(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-52TCP family protein