PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_165360_pyos.t1
Common NameSOVF_165360
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 496aa    MW: 54249.4 Da    PI: 5.2592
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_165360_pyos.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09305352455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++sLq
  Sp_165360_pyos.t1 305 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKATVLDEIINYVQSLQ 352
                        8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.44E-11299356No hitNo description
SuperFamilySSF474592.49E-17299370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17301370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6305352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10307357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MEKELNCSNL MEMSSEQLAN CYFHPNWENS NDQNDPFESA LSSIVSSPTT TGVAASNGGG  60
GGMMIRELIG RLGSICDSEG GEVSPQQSCI AATGNNSTNN SCYSTPLNSP PSKFNLSSLM  120
MIMGNHNNNN NNYPIQSNLG SFNPDPGFVE RAAKLSCFGN NLADLVGVNC SNNNNSRLLV  180
SKLESGKLSR VNSDKKLGEN GELGDSREGS SVSEQNPGVE IGAKPQIDAT SRKRKSASKA  240
KVKDTSVKDD KVEVENEETN AKRSKIDEKE GKKEQNTEQN AGESKPEPFK DYIHVRARRG  300
QATDSHSLAE RVRREKISER MKFLQDLVPG CNKVTGKATV LDEIINYVQS LQRQVEFLSM  360
KLATVSPRME FNMEALLSKD MFQSRGSSVQ QQTMYPIDHN SAQGFPFGYQ SNQQMSLPLP  420
NGIENPFSAN PMNGTGIRRN PSIPLPSIDG FVDSMTQLPT LWEDDLQSLV QMGIVQNQTQ  480
NVPSGTIPNG QMKVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673318.10.0PREDICTED: transcription factor bHLH78
TrEMBLA0A0K9QN730.0A0A0K9QN73_SPIOL; Uncharacterized protein
STRINGVIT_05s0029g00390.t011e-160(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.19e-86bHLH family protein