PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_158840_zjzt.t1
Common NameSOVF_158840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 247aa    MW: 28287.8 Da    PI: 5.2877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_158840_zjzt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.65.9e-1095143455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++  rEr RR+++N++f +L ++l +    ++ K +K + L  A++ +k+L+
  Sp_158840_zjzt.t1  95 TKACRERERREKLNDSFLNLSSVLEPG---RAAKTDKLALLSDAIRIVKQLR 143
                        6789**********************9...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.06E-791147No hitNo description
PROSITE profilePS5088812.77391142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-795142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1296167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-897148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-1398164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGTFDDTAWD LPLDYFIDDV ASPNFSWVDP SSSIEIDFSR TSMIHEQESE RQRPMKSSCI  60
EIDFSQTSSA VQEQESEMEC PKKRGRSAVY SNPKTKACRE RERREKLNDS FLNLSSVLEP  120
GRAAKTDKLA LLSDAIRIVK QLRTENEGFK DENKKLQEEI ESLKAEKNEL RDEKSTLRAE  180
KEKMELHMKS MSGIPGPGMI PPYPSPYQAG PNKMALYPSY GMYPMWHYLP PSTRDTSRDH  240
ELRPPAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086PKKRGRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00102PBMTransfer from AT4G14410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671056.11e-155PREDICTED: transcription factor bHLH104
SwissprotQ8L4679e-65BH104_ARATH; Transcription factor bHLH104
TrEMBLA0A0K9QQQ40.0A0A0K9QQQ4_SPIOL; Uncharacterized protein
STRINGVIT_05s0049g00460.t012e-76(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.21e-58bHLH family protein