PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_155820_caso.t1
Common NameSOVF_155820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TCP
Protein Properties Length: 455aa    MW: 47534.5 Da    PI: 7.7119
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_155820_caso.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.68.9e-38892662121
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                        a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s +    
  Sp_155820_caso.t1  89 APKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSVPsqlr 180
                        789*****************************************************************998887777777777444446666 PP

                TCP  89 .....................................................kaaksaakskksqksaasalnlakesrakarar 121
                                                                             ++++ a++++++++++++++n ++  + +++ +
  Sp_155820_caso.t1 181 ssssyfspnfttaasasrrnffagiglssdtspssallnfqtatlnlnpgllqAKQECATSTSHPHHHQHHHNNSNDAGSPNSNNN 266
                        66778888888888899999999999999999999999998877766666654222222222222222222222222111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-3993295IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92395149IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDGDHQQQQQ QQQHHHHLEF HNHHRPNFPF QLLEKKEEEA CSSSTPFNAS LAITPSGPGP  60
STSAGPPQIT QPPGGGGESS SGPNSKKLAP KRTSTKDRHT KVDGRGRRIR MPALCAARVF  120
QLTRELGHKS DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSLSVPSQLR  180
SSSSYFSPNF TTAASASRRN FFAGIGLSSD TSPSSALLNF QTATLNLNPG LLQAKQECAT  240
STSHPHHHQH HHNNSNDAGS PNSNNNNNSQ NNSNNNNQLD LSEAADDGGG GRKRRLEGEY  300
GAAAAAGAGG YGQYPNFWMV TNGGNQGAAA AAVMSGDPIW TIPSVNNSAA AGLYRGSVPS  360
GLHFMNFAAP MTLLPSQQLG PTMSSGAGNG GGGGGGGGHN TMSPGEQAQH LGLLTGLNPY  420
RNVQQGGGMS DSQASGSHSH HGDDRHDTTS HSHHS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860188.10.0transcription factor TCP14
TrEMBLA0A0K9QR910.0A0A0K9QR91_SPIOL; Uncharacterized protein
STRINGXP_010695711.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.12e-44TCP family protein