PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_149800_prfg.t1
Common NameSOVF_149800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 240aa    MW: 26658.1 Da    PI: 7.9049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_149800_prfg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-1283130454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  Av+ + +L
  Sp_149800_prfg.t1  83 SKACREKARRDRLNDKFMELGSILEPG---RTPKTDKAAILSDAVRMVTQL 130
                        5678**********************9...8***************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.00879130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-882135No hitNo description
Gene3DG3DSA:4.10.280.103.3E-1483153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-1083130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-1384156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1085136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00456145177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVSQENPNWL YDYSYIDEIQ ISVPDCNFAA PTSAFNNCPL QQALNVPFNV SAEIDGTYGD  60
SEGPKENNSK KRGRSESCAP SSSKACREKA RRDRLNDKFM ELGSILEPGR TPKTDKAAIL  120
SDAVRMVTQL RSEAQKLKDS NSNLQEKIKE LKTEKNELRD EKQRLKAEKD KLEQQLKTVN  180
TQPSYLPTPT AIPAAFAPPT QAPGGKLVPF MGYPGVAMWQ FMPPASVDTS QDHVLRPPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694263.11e-156PREDICTED: transcription factor ILR3
SwissprotQ9FH371e-108ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0K9QRB41e-180A0A0K9QRB4_SPIOL; Uncharacterized protein
STRINGPGSC0003DMT4000495921e-120(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-100bHLH family protein