PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_148690_xaog.t1
Common NameSOVF_148690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TCP
Protein Properties Length: 230aa    MW: 25221.1 Da    PI: 6.8025
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_148690_xaog.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.63.9e-3378154680
                TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..sec.eaessss 80 
                        ++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i+ +tgt++ +a    + ++++sss
  Sp_148690_xaog.t1  78 SSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRTDGQTIEWLLRHAEPSIIRATGTGTVPAvaD-FtSPAKSSS 154
                        689*********************************************************77777321.122222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-2979197IPR005333Transcription factor, TCP
PROSITE profilePS5136926.78580134IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNHHEPPKVT MGSETTILSN HLSTSDQPQF ESPESQPSLP LSFSLPFPPM SITSSAAKST  60
TTTASTTTKL AVSRRRVSST KDRHTKVNGR GRRVRMPPLC AARIFQLTRE LGHRTDGQTI  120
EWLLRHAEPS IIRATGTGTV PAVADFTSPA KSSSTPAIAA LPLSIDNGWH FPSQTVGLEF  180
GYRHIPSFTA LLLQPDDGEL RMRQQHEGQD QDEEQGDPAD FAIAKEEDQN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859588.11e-169transcription factor PCF1
TrEMBLA0A0K9QRN61e-168A0A0K9QRN6_SPIOL; Uncharacterized protein
STRINGXP_010684094.11e-64(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.13e-34TCP family protein