PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_147650_hjcs.t1
Common NameSOVF_147650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 474aa    MW: 51403.4 Da    PI: 4.6656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_147650_hjcs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11291333754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Sp_147650_hjcs.t1 291 MAERRRRKKLNDRLYLLRSVVPKiS------KMDRASILGDAIDYLKEL 333
                        79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.599284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16287355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9290333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-14290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.26E-13291338No hitNo description
Gene3DG3DSA:4.10.280.101.2E-14291346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.59E-5402462No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MLSRSNGVTW VDDTGEQDDG VSWTRPPQQP SQPPLDGGDW YLNGGHIITP SPQLSSGIGN  60
DNLLLPSTLQ TALSCSSQPQ FDPFAKSSLS SFLSNNPFEA TAFNFPSEPS FLPPVNHSEP  120
GPSFELPGFG YPGLESLDPN PAFFGNRVKM LMPLEVGPTI GPPPVEPSLF QKRAMVRSYS  180
TGSDKLGELG GGFWGGRGKR KRDNSNGDGD FEEDEVEGSF GVSMVNYDSD EQFEEGDGGN  240
NFTMNNDNSI NDGDTGNFSN SNTNSMVTGG GVAGGEKGKG KRKGLPAKNL MAERRRRKKL  300
NDRLYLLRSV VPKISKMDRA SILGDAIDYL KELLERISEL HSELESSNPN PLMPTSSHPS  360
TLIPPTLPCR VKEELSPNSL PVPKNQLARI EVSAGEGRAV NIHFFCARRP GLLLSTLEAL  420
ENLGLDIQQG VISCFNGFAL DIFRAEQYRE GNEVLPEQIK AVLLDSAGFH GVNM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280298KRKGLPAKNLMAERRRRKK
2292299ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682978.11e-139PREDICTED: transcription factor ICE1
RefseqXP_010682979.11e-139PREDICTED: transcription factor ICE1
SwissprotQ9LSE21e-107ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0K9QS480.0A0A0K9QS48_SPIOL; Uncharacterized protein
STRINGVIT_14s0068g01200.t011e-117(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.43e-92bHLH family protein