PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_139660_rjuj.t1
Common NameSOVF_139660
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 133aa    MW: 14520.2 Da    PI: 4.8678
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_139660_rjuj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.93.3e-0969131148
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee................vikevdiykvePwdLp 48 
                        lp+G+rF+Ptd+el+ ++L+ kv+++++++ e                   e +i++++P +Lp
  Sp_139660_rjuj.t1  69 LPAGVRFDPTDQELI-QHLEGKVRRSPNDVGEsssvelhplidefiptLGGENGICYTHPDKLP 131
                        799************.99*********666445666677777775542233447*******998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-862132IPR003441NAC domain
PROSITE profilePS5100510.61269133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MTWCNEIDDV QTVEKATFAP PPPPPPPTSS RPVSDNNNSI VVRSVKSCPS CGHQIKFQQQ  60
TKINDLPGLP AGVRFDPTDQ ELIQHLEGKV RRSPNDVGES SSVELHPLID EFIPTLGGEN  120
GICYTHPDKL PGN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838562.11e-83NAC domain-containing protein 73-like
SwissprotO494599e-44NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0K9QUK39e-93A0A0K9QUK3_SPIOL; Uncharacterized protein
STRINGXP_010689784.18e-46(Beta vulgaris)
STRINGPOPTR_0017s04800.12e-45(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.13e-44NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]