PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_109500_rfdz.t1
Common NameSOVF_109500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 269aa    MW: 31781.1 Da    PI: 6.5125
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_109500_rfdz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.59.4e-22221642128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpk...kvkaeekew..yfFskrdkkyatgkrknra......... 77 
                        p+GfrF+Pt+ +l++++L++k+++++  + +++ ik+vd+yk++P+ + +   +++ ee+e+  yfF+k +k+  +++ k  +         
  Sp_109500_rfdz.t1  22 PVGFRFDPTEYQLLNYFLNHKISDQElPPYTQFlIKDVDLYKHHPSYFFQeilQFNIEEHEIrgYFFTKLKKAGINSSSKDNSyynrrvcdd 113
                        89************************53344556************995335555556665556*****99998876655554466777899 PP

                NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++ g+W   g+d ++++ +g ++g  k L f +  ++k +  +W mhey++
  Sp_109500_rfdz.t1 114 ygVEYGTWTGMGRD-PIFDIHGYQIGFDKYLKFSEVGDEK-STIEWKMHEYSF 164
                        8888********95.78887**************876666.689*******85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-2212187IPR003441NAC domain
PROSITE profilePS5100526.63621188IPR003441NAC domain
PfamPF023654.0E-1422163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVINNKDTMH LLDQQTMNFE IPVGFRFDPT EYQLLNYFLN HKISDQELPP YTQFLIKDVD  60
LYKHHPSYFF QEILQFNIEE HEIRGYFFTK LKKAGINSSS KDNSYYNRRV CDDYGVEYGT  120
WTGMGRDPIF DIHGYQIGFD KYLKFSEVGD EKSTIEWKMH EYSFHPSVMP VCSKEEYKDL  180
VICRVDMKMI GNAVKRRAST KNKGLNKVLF LFELKQIYDD NVKSIIPILP SSLPHVDNQA  240
IICIKKEEDE SYSEESVSNK KQKTDHRMN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849123.11e-113NAC domain-containing protein 7-like
TrEMBLA0A0K9R3U20.0A0A0K9R3U2_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.11e-13Arabidopsis NAC domain containing protein 26