PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_105870_tkaa.t1
Common NameSOVF_105870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TCP
Protein Properties Length: 284aa    MW: 29486.8 Da    PI: 10.2522
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_105870_tkaa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.62.2e-3845141289
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg... 88 
                        a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  +++s  s ++  + g   
  Sp_105870_tkaa.t1  45 AVKKAPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPHSLASHHHLRTVGltt 136
                        789*************************************************************9999988844444444444322222332 PP

                TCP  89 ....k 89 
                            k
  Sp_105870_tkaa.t1 137 sadnK 141
                        22220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-3251145IPR005333Transcription factor, TCP
PROSITE profilePS5136927.89251105IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSAIDGATNG GGGGGALIEL PHSLSSQQQQ QQRQATTATT TTALAVKKAP AKDRHSKVDG  60
RGRRIRMPII CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTSSP  120
HSLASHHHLR TVGLTTSADN KVSPSPSPTP FLLGKRLRTT AEENEAQNGG VEKEDVVTTA  180
SLGPTAGYWI PTRPDFWSFA TPDMVVGPTS ALGQQAAAAA AMAGRFLSHQ QQQQVTLGEA  240
SRVGNYMSIG QGHHLNLLAS LSGAPASGGG AGGSSGGRRD DDPR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021841964.10.0transcription factor TCP21-like
SwissprotQ9FMX25e-64TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0K9R6R10.0A0A0K9R6R1_SPIOL; Uncharacterized protein
STRINGXP_010688658.11e-103(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-43TCP family protein