PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_101360_cwuq.t1
Common NameSOVF_101360
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 271aa    MW: 30695.9 Da    PI: 8.475
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_101360_cwuq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.62.5e-32311711128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 
                        lp+G++F+Ptd e++  +L++kv+++       l   +    +i+   +i++++P +Lp  v+++    +fF++ +k+y+tg+rk+r+++  
  Sp_101360_cwuq.t1  31 LPAGVKFDPTDPEIL-GHLEAKVKSDLsrlhplL---DefipTIEGEnGICYTHPDKLP-GVTKDGVMRHFFHCPSKAYTTGTRKRRKVHtd 117
                        799***********9.89*****99886665442...233333665557**********.455556678******************74445 PP

                NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                            + +W++tgk++++l+ +g ++g kk+Lv+y   gr++k+ekt+Wvmh+y++
  Sp_101360_cwuq.t1 118 edggETRWHKTGKTRPILV-NGGVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHI 171
                        6655778************.8999**********66589**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-3727190IPR003441NAC domain
PROSITE profilePS5100531.9331190IPR003441NAC domain
PfamPF023651.2E-1432171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNPLRTIACP SCGHHFSLQD QAGGINDLPG LPAGVKFDPT DPEILGHLEA KVKSDLSRLH  60
PLLDEFIPTI EGENGICYTH PDKLPGVTKD GVMRHFFHCP SKAYTTGTRK RRKVHTDEDG  120
GETRWHKTGK TRPILVNGGV KGFKKILVLY TNYGRQRKPE KTNWVMHQYH IGPNEEERDG  180
EFVLSKVFYQ TQPRQCGSTI KELPIDNEHP PLIKPPLNYY QPSYISYEHH PHHHNVVVAE  240
QNRESPPQLI PNLILQGDVP SLFSIATTRK S
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861296.10.0NAC domain-containing protein 73-like
SwissprotO494591e-110NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0K9R6G20.0A0A0K9R6G2_SPIOL; Uncharacterized protein
STRINGXP_010686394.11e-175(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-112NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]