PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_092940_qpgn.t1
Common NameSOVF_092940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 192aa    MW: 21316.5 Da    PI: 7.9101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_092940_qpgn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.90.00011361654
                       HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       +N+ +  Lr+l P     + kK + a+i   +ve+Ik+L
  Sp_092940_qpgn.t1  1 MNDHLKILRSLTPCF---YIKKGDQASIIGGVVEFIKEL 36
                       8*************9...9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.6E-5148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-5141No hitNo description
PROSITE profilePS5088810.506136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-8156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MNDHLKILRS LTPCFYIKKG DQASIIGGVV EFIKELHQVL QSLESQKRRK SLSPSPGPSP  60
KQLQQPSPSP RQLANANIIG NHSFQFDGGK ELVASCNSPV ADVEAKISGC NVVLRVISKR  120
SHGQLLRIIT TLEKLSFEVL HLNISSMDDT VLYYFVVKIG LECELSMEEL AAEVQRSFCT  180
NHTITNNNIT EI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693896.11e-108PREDICTED: transcription factor MUTE
SwissprotQ9M8K62e-74MUTE_ARATH; Transcription factor MUTE
TrEMBLA0A0K9RA731e-140A0A0K9RA73_SPIOL; Uncharacterized protein
STRINGSolyc01g080050.2.11e-79(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.14e-65bHLH family protein