PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_089090_qymp.t1
Common NameSOVF_089090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 639aa    MW: 70169.5 Da    PI: 5.7605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_089090_qymp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12454499454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Sp_089090_qymp.t1 454 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 499
                        799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-5125217IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.72E-15453503No hitNo description
SuperFamilySSF474595.23E-18453522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-10454499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-18454520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-16456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MMDSYQPSPT PSATTPATIT AQDTLQSRLQ ALIDYPATVR GESWTYAIFW QYSVDFSGQP  60
LLGWGDGYYR GEDKNTRRDK MENTQNSNKI LQDSAEQEHR KKVLRELNSL ISGASPAEDS  120
PVEEEVTDTE WFFLISMTHT FASGEDLPGQ AHLSSNPIWA AGVDRLSTSP CNRAKQGSCF  180
GLQTMVSIPV LNGVVELGST ELIFQSHDLM NKVRALFCYG PGPGDSDCSW SVPLPAPAPA  240
PSGESDPTAM WINDPNPPEL RKTPTPPPPQ PPPPAQQPKV INLDSPIKSN PSEIQKGGFF  300
TRELNFSDYA GCNGGASKIN GSLKPESGEI LSFGGGGDAK RSTNNNNSNS NNGNVGLFGT  360
NSQFLMDDNS NKKKRPTNSR GSNDEGMLSF TSGVILASSG IGKSSNNGGA DSGHSDLDAS  420
IREVDSSIVV APEPEKRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNV  480
SKMDKASLLG DAISYINELR TKLTDFESEK EGLIAQVEEM KKELLSNKGS QNQQHQQQQQ  540
PPFFESDVKN GIKQQLMDLE IDVKIIGWEA MIRVNCNKKN HPAARLMAAL KELELDVTHA  600
SVSVVNELMI QQATVKMCNR YYSQEQLKMV LVSKVSDPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A1e-60222196194Transcription factor MYC3
4rs9_A1e-60222196194Transcription factor MYC3
4rqw_B1e-60222196194Transcription factor MYC3
4rqw_A1e-60222196194Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1435443KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677236.10.0PREDICTED: transcription factor MYC2-like
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A0K9RA930.0A0A0K9RA93_SPIOL; Uncharacterized protein
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-159bHLH family protein