PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_087960_dzny.t1
Common NameSOVF_087960
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TCP
Protein Properties Length: 325aa    MW: 36904.2 Da    PI: 6.2564
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_087960_dzny.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.43e-351522983133
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...... 88 
                          kdrhski T++g+RdRR+Rls+e+a+ fF+Lqd+LGfdk+s t+eWLl q+k a  e++++++ sas++++ +  ss++++  +      
  Sp_087960_dzny.t1 152 SNKDRHSKIRTAQGLRDRRMRLSLEVARPFFKLQDMLGFDKASRTVEWLLLQSKSATEEAVQSKNGSASDVTKCTTMSSTASDDCEvdstiv 243
                        579************************************************************88888777444444444433333455667 PP

                TCP  89 ...........kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                                   k  k+ + + kk++++ +   +  ke+r+ a +ra++rt e+m ++
  Sp_087960_dzny.t1 244 vegrkggtstpKVTKKGPkCVKKDEHKMK--KKRTKEERKVAIERAKKRTLERMIQN 298
                        77777776654333333323344444444..6666699999999******9999766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.1E-36152295IPR005333Transcription factor, TCP
PROSITE profilePS5136931.686153211IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDHPIMFNPS STTTTTTTTT TPSPILYVDN ILNYLLDDLN PNYSNKQEDH YLTSYYQLPS  60
PLIYNEIEGF VTNHDLQFLQ QPSLLGNNLT EDGEHSSIFE VEHQNKVEGD ENENENENEN  120
EINGIVEDCE VMNQTKDVVS HGGLSTKRKR SSNKDRHSKI RTAQGLRDRR MRLSLEVARP  180
FFKLQDMLGF DKASRTVEWL LLQSKSATEE AVQSKNGSAS DVTKCTTMSS TASDDCEVDS  240
TIVVEGRKGG TSTPKVTKKG PKCVKKDEHK MKKKRTKEER KVAIERAKKR TLERMIQNQG  300
GQVKEINHEF VDDADLKWIG ALYQV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849833.10.0transcription factor CYCLOIDEA-like
TrEMBLA0A0K9RAP20.0A0A0K9RAP2_SPIOL; Uncharacterized protein
STRINGXP_010695622.14e-99(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-25TCP family protein