PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_071500_shoz.t1
Common NameSOVF_071500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TCP
Protein Properties Length: 316aa    MW: 34097.2 Da    PI: 7.4714
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_071500_shoz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.23.3e-3945130286
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnss 86 
                        a+k+++++++hTkv+gR RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+pai ++tg+++++as+    +  s  s++s+++
  Sp_071500_shoz.t1  45 APKRTSNKDRHTKVDGRSRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPAIVAATGSGTIPASFLaasS--SGASAVSQQG 130
                        789******************************************************************8885332..3333333222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3149300IPR005333Transcription factor, TCP
PROSITE profilePS5136927.34251105IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDDNRNPEEN QQQPQQLVTI SPSAATTTSS KDDLQQKQQL QQQLAPKRTS NKDRHTKVDG  60
RSRRIRMPAL CAARVFQLTR ELGHKTDGET IQWLLQQAEP AIVAATGSGT IPASFLAASS  120
SGASAVSQQG ASVSLGLHSK LNDLRAGVEV GNRANWANFG DNLGRSQVGT SIWPSIGGGY  180
AQVFDTGSNL VSQNSGYVTN FQLQGVGLPT TNMGLLSFTP ILARGTQIPG LQLGLSQDGH  240
GGVIGQLYQQ QQQQQQQQLQ HQQQQHQDHE QNNTGSGSGS GSAAATAEPV HQHQQQQQQQ  300
HHLQLQSHSN DNSREQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865938.10.0transcription factor TCP20-like
SwissprotQ9LSD52e-57TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A0K9RFH80.0A0A0K9RFH8_SPIOL; Uncharacterized protein
STRINGXP_006484165.12e-79(Citrus sinensis)
STRINGXP_006437974.12e-79(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.17e-50TCP family protein
Publications ? help Back to Top
  1. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]
  5. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  6. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  7. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]