PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_069780_ywkn.t1
Common NameSOVF_069780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 263aa    MW: 29492.9 Da    PI: 6.68
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_069780_ywkn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-1362113155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i+  A++++k+L+
  Sp_069780_ywkn.t1  62 QRMTHIAVERNRRKQMNEYLNVLRSLMPDS---YVQRGDQASIVGAAINFVKELE 113
                        79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.18E-1260117No hitNo description
PROSITE profilePS5088815.29461112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1661128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1062113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1362125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1067118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
YDHECWGLVN SSSPDQDRNA AAAEVEAEEN GCGYDYDGGP MVRPKQRRRA RAKKNQEEIE  60
NQRMTHIAVE RNRRKQMNEY LNVLRSLMPD SYVQRGDQAS IVGAAINFVK ELEHNLQSLS  120
AKKQMKENGT DTDSSSSSSS SIMPFGEFFT FPQFSSSNKG TSQEPHHDHA SVEGGADVQV  180
TMVECHAHLK IRLRRPPKQL SKLISGFNSL RLSVLHLNVN TAHDGVVLYT FSLKVEAESK  240
LNSVDDIARE VYLLLGRIQE EAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16273RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694628.11e-117PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T42e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0K9RGC70.0A0A0K9RGC7_SPIOL; Uncharacterized protein (Fragment)
STRINGPOPTR_0013s02680.18e-84(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-72bHLH family protein