PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_068120_ctqx.t1
Common NameSOVF_068120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 224aa    MW: 24365.1 Da    PI: 10.2181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_068120_ctqx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.2e-1453100254
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +++h+e+ErrRR+riN  f++Lr++lP++      K +Ka++L ++v+ +k+L
  Sp_068120_ctqx.t1  53 CKSHKEAERRRRKRINGHFATLRSVLPNL-----VKTDKATVLAEVVRRVKEL 100
                        789*************************9.....7************999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.27551100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1153100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.93E-554103No hitNo description
Gene3DG3DSA:4.10.280.106.4E-1355109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1355109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-1257106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.2E-7134189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MLVNTMANIY EMGTSSNNIH EENGSIIANA ATKYVVCSSK VGISPEAKAL AACKSHKEAE  60
RRRRKRINGH FATLRSVLPN LVKTDKATVL AEVVRRVKEL KKATSELTEA DYDACLLPGD  120
IDKVSLRRNE NDNTTLIATL CSEDRPDLIV DMTRALRSVK GKVVKAEMAT VGGRTKNVLW  180
VRGVGGGVPE GLLKRALEVV VDKPVSSSSS FSGLGHGLRI HRPY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680330.11e-96PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y16e-36BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0K9RIG11e-163A0A0K9RIG1_SPIOL; Uncharacterized protein
STRINGPGSC0003DMT4000606158e-47(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-36bHLH family protein