PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_067200_ccqz.t1
Common NameSOVF_067200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 237aa    MW: 26742.2 Da    PI: 5.4532
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_067200_ccqz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.5e-063886254
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       ++ + erEr  R+++N+ fe+L ++l  +    ++   Ka++L ++++ +k+L
  Sp_067200_ccqz.t1 38 KVLKAERERLKREQLNELFEKLASVLELN----QENSGKASVLNETIKLMKDL 86
                       667889********************997....45566888999999999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.64E-63498No hitNo description
SuperFamilySSF474596.54E-1136103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.2083686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-539110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0044292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGSDVLDDPV VNEESDVPED VLDDSHSNKR KRGKVPKKVL KAERERLKRE QLNELFEKLA  60
SVLELNQENS GKASVLNETI KLMKDLVSHI KSLRKENETL LSESQYMTAE KKELKEETTA  120
LEVQIRKMQN EMEERLGQSK PDLNVSPSLD CWHAETPSHL PPMATNTDRS SQQPPILGPL  180
YVIPINPDLQ AFQKVDTVSN PTITVSKPHA RYPTPADSWP SQLLLSKQAE ATIRQSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685315.11e-116PREDICTED: transcription factor bHLH47
RefseqXP_010685316.11e-116PREDICTED: transcription factor bHLH47
SwissprotQ9SN748e-53BH047_ARATH; Transcription factor bHLH47
TrEMBLA0A0K9RH891e-173A0A0K9RH89_SPIOL; Uncharacterized protein
STRINGGLYMA05G01150.11e-60(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-44bHLH family protein