PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_056700_tycm.t1
Common NameSOVF_056700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TCP
Protein Properties Length: 557aa    MW: 59734.7 Da    PI: 7.062
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_056700_tycm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.59.9e-381082582130
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssas 71 
                         g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                            
  Sp_056700_tycm.t1 108 SGGKDRHSKVWTAKGPRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAINELPSLntstfppetprqlsderkpnllA----- 194
                        689*************************************************************77755555544444433333331..... PP

                TCP  72 eceaesssssas...............nsssgkaaksaakskksqksaasalnlak.esrakarararertrekm 130
                                                   n++++  +ks  +s++s++s+ s l+l + e r kar+rarert++++
  Sp_056700_tycm.t1 195 -----------VdsadveldgdcsygqNQQQQMGSKSGCCSNNSEASKGSGLSLCRsEIRVKARERARERTAKDK 258
                        ...........022222222223332122233344455589999999999999999999***********99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-41109258IPR005333Transcription factor, TCP
PROSITE profilePS5136932.088110168IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.514240258IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MEVDEIQSCQ QACKYSRVNS NGRIDSSKIE GGGGSGGHDN GGRGDEVEEE SELSRAIVPT  60
TTSCTAPAAV LGNDSSGGVG GDMQVESSSR FGRQWQHSSR IIRVSRASGG KDRHSKVWTA  120
KGPRDRRVRL SVTTAIQFYD LQDRLGYDQP SKAVEWLIKA ASDAINELPS LNTSTFPPET  180
PRQLSDERKP NLLAVDSADV ELDGDCSYGQ NQQQQMGSKS GCCSNNSEAS KGSGLSLCRS  240
EIRVKARERA RERTAKDKDR DGEPSRVSIV SHQQQHQQQQ QQQQQQQQQN VSSMPQTSSF  300
TQLLTAGMSN LNESNNSAAA AAASSSPSPH HHHVDSEVDL FHKHSRGGGN NNNNQWLSSA  360
ASTTPMADYF GTGLMALSSS RTGQVQLGNN TSSIHITSFG ASENHHQSHH ENLHHHPHFP  420
FLADQHLIQV ANAAASAGAS GAGAGAGAGA GGNDYNLNFS ISSSSTPTSS LAAGFNNRGT  480
LQSNSPSLLP YLQRFSTTDG SSLPFFLSNA TVSSSSPTII ENHHNHHHQH QQFHPPGLQL  540
YYGDGSRDPD HKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-24115169155Putative transcription factor PCF6
5zkt_B5e-24115169155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848773.10.0transcription factor TCP2
RefseqXP_021848774.10.0transcription factor TCP2
TrEMBLA0A0K9RLZ60.0A0A0K9RLZ6_SPIOL; Uncharacterized protein
STRINGXP_010687111.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.28e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2