PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_052800_gxnr.t2
Common NameSOVF_052800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 213aa    MW: 23643.2 Da    PI: 8.8917
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_052800_gxnr.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-103789255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
                HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                       +  hn+ E+ RR ++N+ f +Lr+llP  +   ++kK  s   +  +A +Y+ +Lq
  Sp_052800_gxnr.t2 37 KLDHNAKEKVRRMKLNEIFLTLRTLLPDsR---RAKKrWSAPYVIDRALDYVPQLQ 89
                       678*************************66...77777****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.33E-83393No hitNo description
SuperFamilySSF474591.7E-1334102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.153588IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-1137101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-73789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-54194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MQYYCPTTTN TTTITTAATT AGVAAVSGVG EGSSSKKLDH NAKEKVRRMK LNEIFLTLRT  60
LLPDSRRAKK RWSAPYVIDR ALDYVPQLQA EVEKLTLEKN NMISVLGKKQ KLQVVVDNNN  120
VANKDNKTLT VSMNEVKNGE VIVQICEQNN NNVGMLSTLI EKLEGQGMIV LGASSQHVCE  180
DRSCFHLHVQ MGENPVEADY VAVLHKKIIS WLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679419.11e-103PREDICTED: transcription factor bHLH101
TrEMBLA0A0K9RLF11e-158A0A0K9RLF1_SPIOL; Uncharacterized protein
STRINGVIT_12s0034g02150.t011e-45(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.15e-28bHLH family protein