PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_048420_mmdm.t1
Common NameSOVF_048420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TCP
Protein Properties Length: 274aa    MW: 31897.3 Da    PI: 9.169
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_048420_mmdm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.46.5e-35862021133
                TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 
                        +agkkdrh ki T++g RdRRvRls+++a++fF Lqd+LGfdk+skt+ WLl + k+ i+e ++t   s+ ++             ++ + +
  Sp_048420_mmdm.t1  86 PAGKKDRHTKITTAQGVRDRRVRLSMNIAREFFNLQDMLGFDKASKTLGWLLAKCKADIDEVAST---SNFKF-------------IETSIE 161
                        589**************************************************************...33222.............222333 PP

                TCP  93 saakskksqksaasalnlak..esrakarararertrekmrik 133
                        +++k+  +++  ++ +n+ak  + r++ar+rarertr+k+  +
  Sp_048420_mmdm.t1 162 ETKKR--ETNYLKNGRNVAKesKRREEARERARERTRNKKIVN 202
                        33333..3333444577777335569************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.2E-3288164IPR005333Transcription factor, TCP
PROSITE profilePS5136930.63389147IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.783181198IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MFSSDNSSLP LYYNQSPSFT SNDNPESNNI FFQHFHHEKL LSTNYPPISD NSIVNLSSQP  60
SINQQETILC PTNNVTMNRV SSSNRPAGKK DRHTKITTAQ GVRDRRVRLS MNIAREFFNL  120
QDMLGFDKAS KTLGWLLAKC KADIDEVAST SNFKFIETSI EETKKRETNY LKNGRNVAKE  180
SKRREEARER ARERTRNKKI VNNHHINHVN HPQSSYNYYN YEMINSKYDQ ESCGYYNDYV  240
NQPPGFPDLN IINLSTEVQI NSRPWETYNN QILH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847095.10.0transcription factor CYCLOIDEA-like
TrEMBLA0A0K9RPV70.0A0A0K9RPV7_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-27TCP family protein