PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_045300_rgzh.t1
Common NameSOVF_045300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 532aa    MW: 58683.9 Da    PI: 6.3879
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_045300_rgzh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12300351155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ +  Lr+l+P++   +  + + a+i   A+e++++L+
  Sp_045300_rgzh.t1 300 QRMTHIAVERNRRKQMNEHLRVLRSLMPSS---YVHRGDQASIIGGAIEFVRELE 351
                        79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.1E-13298354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-13298355No hitNo description
SuperFamilySSF474593.66E-16299367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.951299350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9300351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-8305356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF819953.92E-5378419No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MQKEEKYAAA TGEFAANVNS CSSVLPNQSG SLPPYHQSQP QPQPQPQPQP QPQPQLQGDN  60
TIIEGSGSVM VDYMLNSPSA EIINNPSRTS YQEQQPLVVD EHNSNSSINC ISGGIPINAD  120
RTLSFADVMQ FADFGPKLGL DHFQQEKSHT TDHNIDPVYF LKFPVLSSNS HSHSHSHSHS  180
HSHSHSHMVA DHHGHGNTSS IHDDSNKSIT ERDEDGGFGD PFRERGYSYD HQQDDNNLSN  240
PVQLDFLSND ENLAGTGTGT GTGTGRVVGH NNNNNNKSSS SSSKRKRPRS IKTNEEVESQ  300
RMTHIAVERN RRKQMNEHLR VLRSLMPSSY VHRGDQASII GGAIEFVREL EQLLQCLESQ  360
KRRRLYGDSA SSTVLGVVQQ TPQLVQPQPQ PQPQPQPPPP PPPPPSQPPP MSMSMSAIGN  420
HELDPMGFAG GLLQEETAES KSCFADVEVK VLGFDALIKI LSRRRHGQLI KAIAALEDLH  480
FNILHTNITT IEQTVLYSFN VKVASEARFT AEDIATSVQQ IFTFIHANTN II
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300311RMTHIAVERNRR
2360364KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673433.11e-172PREDICTED: transcription factor FAMA
SwissprotQ56YJ81e-122FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A0K9RNW80.0A0A0K9RNW8_SPIOL; Uncharacterized protein
STRINGBra028357.1-P1e-126(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.16e-87bHLH family protein