PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_038230_pxgw.t1
Common NameSOVF_038230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TCP
Protein Properties Length: 419aa    MW: 46904.6 Da    PI: 6.6777
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_038230_pxgw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP74.53.2e-2347148366
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................. 65 
                        g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl   k  i++l+ +                             
  Sp_038230_pxgw.t1  47 GGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDTTKLDIDKLPPLppipggfnpsqgygmpptpffdasllpsr 138
                        78************************************************************988888777777776666666655555554 PP

                TCP  66 .........s 66 
                                 +
  Sp_038230_pxgw.t1 139 kecgininsT 148
                        4444444440 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.36448106IPR017887Transcription factor TCP subgroup
PfamPF036345.7E-2548108IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MMNLNKDGPP YTTKQEEGDS SKAAAPSRQW SSGFKNPRIV RVSRTFGGKD RHSKVCTIKG  60
LRDRRIRLSV PTAIQLYDLQ DRLGLSQPSK VIDWLLDTTK LDIDKLPPLP PIPGGFNPSQ  120
GYGMPPTPFF DASLLPSRKE CGININSTMN DDVDVDVDVD VDVDVDVDEE DESSIVAKFK  180
YWGDMNAMTM MRSKQKGVDY HHEQGSSSSS QVLAQNLFPI ASSNNTTTNT NNNNNSMLPH  240
PHPHPHPHPH PHPPSFLSNN PMYNYYHLEP SNLSLSQLGS YNDHHHHQGA SQSSSTPQPP  300
SSLSLSSMSQ LFLCPSMATT SFFPSNHHAS FMNNTSHHHQ QQHQQQQVEN DLRQFNRFPL  360
SNNNNPFSSS FHNNNSSGLD MKPAFPLSMN HDPHLQQEDD EDRQGKSSAH NPWKESSGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1953107155Putative transcription factor PCF6
5zkt_B3e-1953107155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856336.10.0transcription factor TCP17
RefseqXP_021856337.10.0transcription factor TCP17
TrEMBLA0A0K9RR590.0A0A0K9RR59_SPIOL; Uncharacterized protein
STRINGXP_010695237.11e-151(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-34TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5