PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_017560_cwtt.t1
Common NameSOVF_017560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 452aa    MW: 48119.2 Da    PI: 6.712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_017560_cwtt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-11259304555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Sp_017560_cwtt.t1 259 HSIAERLRRERIAERMKGLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 304
                        99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.87E-12252308No hitNo description
SuperFamilySSF474591.96E-16252314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.964254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15256313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-9259304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-13260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEGGGMQHSH SHCQVSLDDL QQNGESQSQQ QHQYQESQND DFLDQMLSTI PNCSWPPTPH  60
DLPSPTSNPN LSLKPGDSPP DDREVAAAAF QYPFDEASLV SKLRQQQHQQ QMNEVTAKSL  120
LLQHQQQFLL SRRSPGDTAP AGPGMLPLPL SLGNNDSGVD PSSFKSQVGT EASVQALYNG  180
FGGSLHANAQ PPNQQHFHPP PPPPPPQGGN LTGGQNYGGQ GAGMNGAPPA SASTGGSSGA  240
GAPQRQRVRA RRGQATDPHS IAERLRRERI AERMKGLQEL VPNANKTDKA SMLDEIIDYV  300
KFLQLQVKVL SMSRLGGAAA VAPLVAASEG GAAGRSSNGN QTASGNDSMS ITEHQVAKLM  360
EEDMGSAMQY LQGKGLCLMP ISLATAISTA TSLNRSPLPP PRPHINNNTN HHDIHHHHHH  420
PLIPPPIPSS NVEGDNNKGK PTSDSSVKDP SN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682674.11e-173PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG91e-81BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0K9RXN10.0A0A0K9RXN1_SPIOL; Uncharacterized protein
STRINGPOPTR_0018s11800.11e-120(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.14e-48LJRHL1-like 1