PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_008660_oskq.t3
Common NameSOVF_008660
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 306aa    MW: 34073.9 Da    PI: 4.6289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_008660_oskq.t3genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.3e-08178229255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        r+ +  +E rRR  + ++ + L+ llP+ +   ++k+ +  +i++ ++ +Ik+Lq
  Sp_008660_oskq.t3 178 RERARGAESRRRYIVSQRVQALQALLPPaL---KDKRGNQESIVQDVIGHIKYLQ 229
                        5566779*********************55...*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.0E-6174238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.287176228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-8177238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0047178234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-5178229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.55E-7178233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVYSEPFTGA NYNNGSLPPF PVYQTSDMME SQCWYGDTSL AASGLSEVQM NATYDVTENT  60
QTDALAGIFN QNPLPPLIHH MESKNYDSSV ERSGLTFYGP QERSRNGGLD NLVLSQWMPK  120
EEPISFMDTD CQYAESPAFP VQPVNVNNTP VYLSALKGEA DTSDVAPETL RSETRTNRER  180
ARGAESRRRY IVSQRVQALQ ALLPPALKDK RGNQESIVQD VIGHIKYLQL QLKELSRSRL  240
GGDSSSGPSK FNEGQQPHEQ LFVESLEENL ESLLQENPAE AHKLFESKGL YAVPMAFSNA  300
LLCNKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9S0B90.0A0A0K9S0B9_SPIOL; Uncharacterized protein