PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_004880_jgpp.t1
Common NameSOVF_004880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TCP
Protein Properties Length: 288aa    MW: 31607.9 Da    PI: 7.1464
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_004880_jgpp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.39.3e-3757139283
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                        ++k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqq+++ai ++tgt++ +a++   ++ss+s++ 
  Sp_004880_jgpp.t1  57 PPKRKSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEEAIVAATGTGTMPATFLsGSGSSVSEQR 139
                        689*************************************************************9999977743333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-3262189IPR005333Transcription factor, TCP
PROSITE profilePS5136927.14163117IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MATFLNQQQQ LQQTSPYLDF KEESQIVIPN SNSNSNSNHL ISTNLDENSP IIKKQNPPKR  60
KSNKDRHKKV DGRGRRIRMP ALCAARIFQL TRELGHKSDG ETIQWLLQQS EEAIVAATGT  120
GTMPATFLSG SGSSVSEQRC SVSSGIVSGF SGGLSLINGN LGRTHFQTGS WGYGSGSVHE  180
PGFSSSNSSL MRESLDSRHK MGVQAMGMSN LNMGLMNFGQ QQQQLQERDN LELGLSQENA  240
GFSGLNYGAI NQMYQQFRQN REEAGFGIDQ QENFFDDGDS QSSKLSGI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845872.10.0transcription factor TCP20-like
TrEMBLA0A0K9S1K90.0A0A0K9S1K9_SPIOL; Uncharacterized protein
STRINGXP_010682712.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.13e-40TCP family protein