PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019263
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NF-YB
Protein Properties Length: 142aa    MW: 16124.8 Da    PI: 4.8485
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-32895PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB51.32.9e-168106697
      NF-YB   6 rflPianvsrimkkvlPana.......kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 +lP a v r++k  l   a        + kda     e +  fi ++++ a+d c++ kr+ti++dd+l al ++ f ++vepl++ l+++r+ +++k
  Sof019263   8 DELPRAIVRRLVKDKLSHVAggdgaevIVNKDAMVAFAESARIFIHYLSATANDMCKESKRQTISADDVLKALDEMEFSEFVEPLRTSLQEFRNKNADK 106
                5789999999999988754312222225899**************************************************************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-349140IPR009072Histone-fold
PfamPF008082.1E-10980IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.82E-2810139IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
XLTEAEVDEL PRAIVRRLVK DKLSHVAGGD GAEVIVNKDA MVAFAESARI FIHYLSATAN  60
DMCKESKRQT ISADDVLKAL DEMEFSEFVE PLRTSLQEFR NKNADKRSEA NKKQKEKRRK  120
LNEETLPQKE NDPADDAKEN DD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.31501e-137bud| inflorescence| leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149275.12e-84DNA polymerase epsilon subunit 3
TrEMBLA0A0A9GDS47e-87A0A0A9GDS4_ARUDO; Uncharacterized protein
STRINGGRMZM2G012654_P016e-84(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-38nuclear factor Y, subunit B11