PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018787
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 152aa    MW: 16344.5 Da    PI: 7.3622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17341472PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-202273156
        AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
               ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g+
  Sof018787 22 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIQLRGA 73
               689*******.**********88.....55*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.62E-272282No hitNo description
PfamPF008479.5E-132272IPR001471AP2/ERF domain
PROSITE profilePS5103223.1962380IPR001471AP2/ERF domain
SMARTSM003801.1E-322386IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-212380IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-292381IPR001471AP2/ERF domain
PRINTSPR003671.2E-102435IPR001471AP2/ERF domain
PRINTSPR003671.2E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
XRTTRLVLPG RKRKSDGDAA EPRFRGVRRR PWGKYAAEIR DPWRRVRVWL GTFDTAEEAA  60
KVYDSAAIQL RGADATTNFE QVDDAPVPVP DEVAERLPQP PASAPAPAAS KNASSSATSY  120
DSGEESHAAA ASPTSVLRSF PPSAVADDTC SX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2019791071Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457105.25e-77ethylene-responsive transcription factor CRF2
TrEMBLA0A1B6Q0S91e-75A0A1B6Q0S9_SORBI; Uncharacterized protein
STRINGPavir.Eb00092.1.p2e-79(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-28cytokinin response factor 2