PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018779
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 152aa    MW: 17419.5 Da    PI: 7.1843
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17294111PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.7e-1667118155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  Sof018779  67 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 118
                57****************9995.....234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.063132IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-10134IPR016177DNA-binding domain
CDDcd000182.13E-12133No hitNo description
Gene3DG3DSA:3.30.730.101.1E-11133IPR001471AP2/ERF domain
SMARTSM003801.3E-4138IPR001471AP2/ERF domain
PfamPF008473.7E-1067118IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-1867128IPR016177DNA-binding domain
CDDcd000182.34E-2267126No hitNo description
Gene3DG3DSA:3.30.730.107.4E-2068127IPR001471AP2/ERF domain
SMARTSM003802.2E-2768132IPR001471AP2/ERF domain
PROSITE profilePS5103218.57168126IPR001471AP2/ERF domain
PRINTSPR003674.5E-66980IPR001471AP2/ERF domain
PRINTSPR003674.5E-6108128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding