PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018224
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family LBD
Protein Properties Length: 161aa    MW: 16616.2 Da    PI: 9.142
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-333133730PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.23.4e-304108199
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+l++a+p++  r+++++sl+yeA+ r+ +PvyGavg++++++++++q+++e+
  Sof018224   4 SCNGCRVLRKGCSDACTIRPCLqwiksPDAQANATVFLAKFYGRAGLLNLIAAAPTDAlRPAVFRSLLYEACGRIVNPVYGAVGLLWSGTWHMCQAAVEA 103
                6*****************************************************99988****************************************9 PP

     DUF260  95 allke 99 
                +l ++
  Sof018224 104 VLKGA 108
                98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2663110IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-244104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCSDACT IRPCLQWIKS PDAQANATVF LAKFYGRAGL LNLIAAAPTD  60
ALRPAVFRSL LYEACGRIVN PVYGAVGLLW SGTWHMCQAA VEAVLKGAPI VQVSPDDAAG  120
PPIHAAAAAA AAAAYDIRHV FPKSSSSNKQ SAAAAAAGAP P
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.156791e-169bud| callus| crown| leaf| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440381.17e-88hypothetical protein SORBIDRAFT_09g030780
SwissprotQ9M8863e-70LBD41_ARATH; LOB domain-containing protein 41
TrEMBLC5YX267e-88C5YX26_SORBI; Putative uncharacterized protein Sb09g030780
STRINGSb09g030780.12e-87(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-68LOB domain-containing protein 41