PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017544
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family LBD
Protein Properties Length: 171aa    MW: 17267.8 Da    PI: 9.5038
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-28557PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.62.3e-292103197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++ Cvl+p++     +++q +++ +v+k+FG++ +l++++a+p+ +r+++++sl+yeA  r+ +Pv+Gavg++ +++++l+q++++++
  Sof017544   2 SCNGCRVLRKGCSEACVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPDAQRPALFQSLLYEAAGRTINPVHGAVGLLGTGNWHLCQAAVDTV 101
                6*********************9998656778***************************************************************99987 PP

     DUF260  96 ll 97 
                l+
  Sof017544 102 LR 103
                76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.8531107IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-252100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEACVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPDAQR  60
PALFQSLLYE AAGRTINPVH GAVGLLGTGN WHLCQAAVDT VLRGGAIGPL PELGITGSAG  120
NIYGTPAGGK RAGGWSTFST AKRVRKAAVS AAGGGGGTGG AQAPVEAXXX X
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.155150.0bud| crown| inflorescence| meristem| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983938.15e-93PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN113e-69LBD37_ARATH; LOB domain-containing protein 37
TrEMBLC5WVK77e-89C5WVK7_SORBI; Putative uncharacterized protein Sb01g031790
STRINGSb01g031790.12e-88(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-69LOB domain-containing protein 37