PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016767
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 182aa    MW: 19555.4 Da    PI: 9.4908
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-81973PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-192171256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
               + +GVr ++ +gr++AeIrdp     r +r++lg+f+t e+Aa+a++aa+++l+g+
  Sof016767 21 RLRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTTEQAARAYDAAARRLRGP 71
               679******.**********8...2.35**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-142070IPR001471AP2/ERF domain
CDDcd000183.99E-152077No hitNo description
PROSITE profilePS5103222.9062178IPR001471AP2/ERF domain
SMARTSM003806.9E-292184IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-212178IPR016177DNA-binding domain
PRINTSPR003671.1E-92233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-292378IPR001471AP2/ERF domain
PRINTSPR003671.1E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MAPKRSSEER AAAEEEREQP RLRGVRKRPW GRYAAEIRDP ARKARVWLGT FDTTEQAARA  60
YDAAARRLRG PRATTNYSYP DAVAVPAPTC TAPAASASCG TESSSSSSRD GDQPLAVTVQ  120
SLRPRLPSSL DLSLGLFPAI VGGQPYLFLD PXAGVCALAP IKREEERTWY SGSSSPVGAP  180
AX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-192377762ATERF1
3gcc_A2e-192377762ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.180820.0crown| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445222.12e-42ethylene-responsive transcription factor 8
TrEMBLC5YIV94e-41C5YIV9_SORBI; Uncharacterized protein
STRINGSb07g006210.16e-42(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-17erf domain protein 9